Objective To investigate the diagnostic accuracy of vaginal three-dimensional Doppler ultrasonography (3D-CPA) in endometrial disease of female patients in postmenopausal state. Methods A total of 110 patients with endometriosis were selected in this study. Patients were divided into 2 groups based on histopathological examination: benign group and malignant group. 3D-CPA was performed in each case. Results The ultrasonographic parameters, blood flow parameters and microvessel density (MVD) in malignant group were significantly different from those in the benign group (P < 0.05). No significant difference in the ultrasonographic parameters among various stages was founded (P > 0.05). MVD of patients with advanced stage was significantly increased compared with inferior stage. 3D-CPA results suggested that it could specifically recognize patients with malignant patients. Conclusion 3D-CPA is worthy for clinical application in screening patients with malignant endometrial disease with high specificity and sensitivity.