Abstract:Objective To investigate the association between the C588T single nucleotide polymorphism of GABAARG2 gene and epilepsy susceptibility in Han children in northern China. Methods A total of 189 children with epilepsy who came to our pediatric clinic and/or hospitalization from March 2013 to June 2018 were selected as subjects. According to the types of epileptic seizures, subjects were divided into partial seizure group (n = 107) and generalized seizure group (n = 82). At the same time, 113 non-epileptic children were selected as control group. General clinical data of all patients were collected. Genomic DNA was extracted from peripheral blood of all subjects, and the C588T polymorphism of GABAARG2 gene was identified by PCR amplification. Genotype and allele frequencies of this locus were determined and analyzed statistically. Results There were significant differences in the average course of disease and abnormal EEG at 24 hours in three groups (P < 0.05). There were significant differences in genotypes of CC, CT and TT and allele C and T frequencies in three groups (P < 0.05). Compared with CC genotype, the risk of epilepsy induced by CT genotype was 2.127 times (95% CI: 1.23, 3.615, P < 0.05) and TT genotype was 3.926 times (95% CI: 2.019, 7.51, P < 0.05). Compared with the C allele, the risk of epilepsy induced by T allele was 2.191 times (95% CI:1.554, 3.094, P < 0.05). Conclusions The single nucleotide polymorphism of GABAARG2 gene C588T is associated with susceptibility to epilepsy in children.