Abstract:Objective To investigate the application of detecting echinoderm microtubule -associated protein-like 4-anaplastic lymphoma kinase (EML4-ALK ) gene rearrangement by qRT-PCR in non-small cell lung cancer cells (NSCLC), and to evaluate the relationship between EML4-ALK gene rearrangement and clinical relevance. Methods A total of 138 patients confirmed with NSCLC in malignant pleural effusion (MPE) were recruited in this study. Cancer cells in MPE were identified by Wright's staining and microfluidic chip technology. EML4-ALK gene rearrangement in cancer cells was determined by Immunohistochemistry (IHC), and quantitative real time polymerase chain reaction (qRT-PCR). Results Ten out of 138 (7.25%) patients were identified with EML4-ALK rearrangement by IHC, who were also verified by qRT -PCR.Sensitivity and specificity of IHC and qRT -PCR were 100%. The EML4-ALK gene rearrangement was correlated with EGFR mutation (P < 0.05), while no relation between the EML4-ALK gene rearrangement and tumor characters including histological type, site of primary onset, clinical stage and lymphatic metastasis (P >0.05). Conclusions qRT-PCR is a reliable method for detection of EML4-ALK rearrangement detection in NSCLC.