Abstract:Objective To study the distribution of hepatitis C virus (HCV) genotypes in the hepatitis C patients of Han nationality in Sichuan, Yunnan and Guizhou so as to provide evidence for prevention and treatment of hepatitis C. Methods HCV in 221 patients were detected by pyrophosphate sequencing method for genotyping, then the differences in pathogenicity of HCV with different genotypes were compared. Results In the 216 HCV-RNA positive patients from Sichuan, Yunnan and Guizhou, there were 4 kinds of genotypes (1, 2, 3 and 6) and 7 kinds of subgenotypes (1a, 1b, 2a, 2b, 3a, 3b and 6a). The subgenotypes 1a, 1b, 2a, 2b, 3a, 3b and 6a accounted for 5.1% (11/216), 36.1% (78/216), 3.7% (8/216), 0.9% (2/216), 7.4% (16/216), 27.8% (60/216) and 17.1% (37/216). In addition, there were 4 cases of rare subtypes (4a/6n), accounting for 1.9% (4/216). The top 3 gene subtypes were 3b, 1b and 6a in Sichuan; 3b, 1b and 2a/3a in Yunnan; and and 1b, 6a and 3b in Guizhou respectively. 3b (33.1%) and 1b (48.3%) were the main subtypes in the male and female patients respectively; 1b (39.8%), 3b (18.6%) and 6a (15.9%) were the main subtypes in the patients over 40 years while 3b (37.9%), 1b (32.1%) and 6a (18.4%) were the main subtypes in the patients younger than 40 years. The main mode of infection was blood transfusion (40.1%), and other unknown reasons also accounted for a large proportion (33.8%). 1b was the main subtype in acute hepatitis C, chronic hepatitis C, liver cirrhosis after hepatitis C and liver cancer after hepatitis C, followed by 3b and 6a. In the patients with hepatitis C, the liver function impairment indicators and HCV load of the 1b subtype were significantly higher than those of other gene subtypes (P < 0.05). Conclusions HCV subtype 1b is the most predominant subtype in hepatitis C patients of Han nationality in Sichuan, Yunnan and Guizhou of southwest China. 3b and 6a subtypes also occupy a very high proportion; and the distribution of gene subtypes is diversified. 1b subgenotype of high HCV load is more likely to cause serious damage of liver function and chronic hepatitis, liver fibrosis and hepatic carcinoma.