Abstract:Objective To compare the differential effects of Saccharomyces boulardii VS Bifidobacterium tetravaccine on intestinal flora structure, fecal short-chain fatty acid levels and peripheral blood Treg/Th17 balance in neonates with hyperbilirubinemia, and to evaluate their impacts on jaundice-related clinical outcomes and safety.Methods A total of 120 neonates with hyperbilirubinemia admitted between March 2023 and November 2025 were enrolled and randomly divided into two groups. Both groups received double-sided intensive phototherapy as the main treatment. The observation group (60 cases) received Saccharomyces boulardii, and the control group (60 cases) received Bifidobacterium quadruple viable bacteria for 3 days. Daily transcutaneous bilirubin, total phototherapy duration, total length of hospital stay, time from meeting phototherapy criteria to discontinuation, and adverse events were recorded. Total bilirubin (TBIL) and indirect bilirubin (IBIL) were measured before intervention and on day 7. The Shannon index, ACE index and β-diversity of intestinal flora were evaluated. Fecal short-chain fatty acids (acetic acid, propionic acid, butyric acid) were detected. Peripheral blood regulatory T cells (Treg) and T helper 17 cells (Th17) were measured by flow cytometry, and the Treg/Th17 ratio was calculated.Results The observation group had shorter total phototherapy duration and shorter interval from meeting phototherapy criteria to phototherapy termination (P 0.05). There was no significant difference in total hospital stay between the two groups (P 0.05). After intervention, the levels of TBIL and IBIL in the observation group were lower than those in the control group (P 0.05), and the pre-post intervention differences of bilirubin indicators were greater in the observation group (P 0.05). After treatment, the Shannon index and ACE index of the control group were higher than those of the observation group, with greater changes in the above indicators and beta diversity (P 0.05). The post-intervention levels of acetic acid, propionic acid and butyric acid in the observation group were lower, and the pre-post differences in these short-chain fatty acids in the control group were greater than those in the observation group (P 0.05). The control group had higher Treg level and Treg/Th17 ratio but lower Th17 level, and presented more obvious changes in Treg, Th17 and Treg/Th17 ratio before and after intervention (P 0.05). The overall incidence of adverse events in the observation group was higher than that in the control group (P 0.05).Conclusion On the basis of phototherapy, Saccharomyces boulardii further shortens phototherapy duration and the time to discontinuation, and reduces TBIL and IBIL levels, but with a higher adverse event rate. Bifidobacterium tetravaccine is more beneficial for improving the Shannon index, ACE index of intestinal flora and fecal SCFA levels, and exhibits better immunological improvement including increased Treg, decreased Th17 and elevated Treg/Th17 ratio.